Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules
Table 1
Comparison of the lowest lRMSDs obtained by BH to those obtained by other methods on the protein dimers studied here. MBH refers to monotonic BH. lRMSDs reported by BH, MBH, and the work in [56] in columns 5–7 are over backbone atoms, whereas those reported by the work in [36, 84] in columns 8-9 are over alpha carbons of the backbone chain.