Research Article

Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 Case

Table 2

List of A. brasilense Sp245 plasmid-borne paralogous genes and putative encoded function.

PlasmidGIFunction encoded

AZOBR1392377419Putative spermidine/putrescine ABC transporter (ATP-binding protein)
AZOBR1392377442Branched-chain amino acid ABC transporter, ATP-binding component (LivF-like) (fragment)
AZOBR1392377443Branched-chain amino acid ABC transporter, ATP-binding component (LivG-like) (modular protein)
AZOBR1392377444Protein of unknown function
AZOBR1392377462Amino acid ABC transporter, ATP-binding component
AZOBR1392377476Glycine betaine/choline ABC transporter, ATP-binding component
AZOBR1392377481Putative spermidine/putrescine ABC transporter subunit, ATP-binding component
AZOBR1392377539Putative ABC transporter (ATP-binding subunit)
AZOBR1392377651ATP-binding protein, ABC-type iron transporter (fragment)
AZOBR1392377679Putative branched-chain amino acid transport system, ATP-binding protein
AZOBR1392377680Putative branched-chain amino acid transport system, ATP-binding protein
AZOBR1392377710Putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like)
AZOBR1392377978Iron-hydroxamate ABC transporter, ATP-binding component
AZOBR1392377992Putative ABC transporter (ATP-binding protein)
AZOBR1392378002Glutamine ABC transporter, ATP-binding component
AZOBR1392378029Putative sugar ABC transporter (ATP-binding protein), with TOBE domain (C-terminal)
AZOBR1392378103Nitrate transporter ATPase
AZOBR1392378153Putative ABC transporter, ATP-binding protein
AZOBR1392378175Putative ABC transporter, ATP-binding component
AZOBR1392378223Iron-dicitrate ABC transporter, ATP-binding component
AZOBR1392378234Iron-dicitrate transporter subunit, ATP-binding component of ABC superfamily, KpLE2 phage-like element
AZOBR1392378265Sulfate/thiosulfate ABC transporter, ATP-binding component
AZOBR1392378307Methionine ABC transporter, ATP-binding component
AZOBR1392378373Putative branched-chain amino acid ABC transporter, ATP-binding component (livF-like)
AZOBR1392378406Cell division ATP-binding protein
AZOBR1392378473Chromosome segregation protein SMC
AZOBR1392378633High-affinity branched-chain amino acid ABC transporter (ATP-binding protein)
AZOBR1392378634ABC transporter ATP-binding protein
AZOBR1392378646Putative ABC transporter (ATP-binding protein)
AZOBR1392378736Putative ABC transporter, ATP-binding protein
AZOBR1392378799Dipeptide ABC transporter, ATP-binding component
AZOBR1392378800Dipeptide ABC transporter, ATP-binding component
AZOBR2392383686Branched-chain amino acid ABC transporter, ATP-binding component
AZOBR2392383691Branched-chain amino acid ABC transporter, ATP-binding component
AZOBR2392383703Type I secretion, ATP-binding protein
AZOBR2392383786ABC transporter, ATP-binding component (tauB-like)
AZOBR2392383794ABC transporter, ATP-binding component
AZOBR2392383844Dipeptide ABC transporter, ATP-binding component
AZOBR2392383919Iron-dicitrate transporter subunit, ATP-binding component of ABC superfamily, KpLE2 phage-like element
AZOBR2392383942Glycine betaine/L-proline transport, ATP-binding protein proV
AZOBR2392383954Putative amino acid transport protein, ATP-binding protein
AZOBR2392384040ABC transporter (ATP-binding protein)
AZOBR2392384049Oligopeptide transport protein (ABC superfamily, ATP-binding protein)
AZOBR2392384050Oligopeptide transport protein (ABC superfamily, ATP-binding protein)
AZOBR2392384088Putative spermidine/putrescine ABC transporter (ATP-binding protein)
AZOBR2392384214Putative ABC transporter (ATP-binding protein)
AZOBR2392384247Putative ABC transporter (ATP-binding protein)
AZOBR2392384353Putative sulfonate ABC transporter, ATP-binding protein (ssuB/tauB/ycbE-like) (fragment)
AZOBR2392384354Aliphatic sulfonates import, ATP-binding protein ssuB (fragment)
AZOBR2392384385Putative ABC transporter (ATP-binding protein)
AZOBR2392384417Putative lipopolysaccharide transport protein B, ATP-binding component of ABC superfamily
AZOBR2392384418Putative Branched-chain amino acid ABC transporter (ATP-binding protein), livF-like protein
AZOBR2392384442Putative sugar ABC transporter (ATP-binding protein), with TOBE domain (C-terminal)
AZOBR2392384449Branched-chain amino acids ABC transporter, ATP-binding component
AZOBR2392384450Branched chain amino acids ABC transporter, ATP-binding component
AZOBR2392384505Putative ATP-binding protein of sugar ABC transporter
AZOBR2392384506Putative ATP-binding protein of sugar ABC transporter
AZOBR3392378942Oligopeptide transport protein (ABC superfamily, ATP-binding protein)
AZOBR3392378943Dipeptide ABC transporter, ATP-binding component
AZOBR3392378957Putative Spermidine/putrescine ABC transporter (ATP-binding protein)
AZOBR3392378962ABC transporter related protein
AZOBR3392378982Glutamine ABC transporter, ATP-binding component
AZOBR3392379006ABC transporter, permease protein (N-ter), ATP-binding protein (C-ter) putative branched-chain amino acid transport protein
AZOBR3392379007High-affinity branched-chain amino acid ABC transporter (ATP-binding protein)
AZOBR3392379018Putative ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter), branched-chain amino acid transport protein
AZOBR3392379019High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding)
AZOBR3392379046Spermidine/putrescine import ATP-binding protein potA
AZOBR3392379104Putative branched-chain amino acid ABC transporter, ATP-binding protein
AZOBR3392379105Putative branched-chain amino acid ABC transporter, ATP-binding protein
AZOBR3392379134Putative amino acid transport protein, ATP-binding protein
AZOBR3392379137ABC transporter, ATP-binding component
AZOBR3392379167Alkanesulfonate ABC transporter, ATP-binding protein
AZOBR3392379193Macrolide ABC transporter, ATP-binding and permease domains
AZOBR3392379260Putative ABC transporter (ATP-binding protein) (tauB-like)
AZOBR3392379271Putative ABC transporter (ATP-binding protein)
AZOBR3392379302Putative ABC transporter (ATP-binding protein)
AZOBR3392379311Putrescine transport protein (ABC superfamily, atp_bind)
AZOBR3392379334Putative ABC transporter (protein fusion consisting of two ATP-binding domains and permease)
AZOBR3392379338ABC transporter ATP-binding protein
AZOBR3392379404Copper ABC transporter, ATP-binding component
AZOBR3392379472ABC tranpsorter, permease protein (N-ter), ATP-binding protein (C-ter), putative branched-chain amino acid transport protein
AZOBR3392379473ABC transporter, ATP-binding protein, putative branched-chain amino acid transport protein
AZOBR3392379616Putative branched-chain amino acid transport system, ATP-binding protein
AZOBR3392379617Putative branched-chain amino acid transport system, ATP-binding protein
AZOBR3392379643Phosphonates import ATP-binding protein phnC (ABC superfamily, atp_bind)
AZOBR3392379659Putative ABC transporter (ATP-binding protein)
AZOBR3392379666Hemin ABC transporter, ATP-binding component
AZOBR3392379711Putative amino acid transport protein, ATP-binding protein
AZOBR4392379725High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding)
AZOBR4392379726High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding)
AZOBR4392379756Protein of unknown function
AZOBR4392379885Putative spermidine/putrescine transport protein (ABC superfamily, atp_bind)
AZOBR4392379891Putative dipeptide/oligopeptide/nickel ABC transporter, ATP-binding protein
AZOBR4392379956Putative phosphonate ABC transporter, ATPase component
AZOBR4392379971Putative spermidine/putrescine transport protein (ABC superfamily, atp_bind)
AZOBR4392380065Sugar ABC transporter, ATP-binding component (RbsA-like)
AZOBR4392380072Sugar ABC transporter, ATP-binding component
AZOBR4392380170Putative ABC transporter, fused ATP-binding/permease protein
AZOBR4392380222Putative ABC transporter, ATP-binding component
AZOBR4392380307Branched-chain amino acid ABC transporter, ATP-binding protein
AZOBR4392380328Branched-chain amino acids ABC transporter, ATP-binding component
AZOBR4392380329Branched chain amino acids ABC transporter, ATP-binding component
AZOBR5392384567Putative secretion ATP-binding protein (ABC-type transporter family), putative toxin/protease secretion system
AZOBR5392384634Putative ABC transporter family, HlyB subfamily, putative protease secretion (ATP-binding protein)