Antimicrobial Resistance of Enteric <i>Salmonella</i> in Bangui, Central African Republic

Mossoro-Kpinde, Christian Diamant; Manirakiza, Alexandre; Mbecko, Jean-Robert; Misatou, Pembé; Le Faou, Alain; Frank, Thierry

doi:https://doi.org/10.1155/2015/483974

Journal of Tropical Medicine

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Research Article | Open Access

Volume 2015 | Article ID 483974 | https://doi.org/10.1155/2015/483974

Antimicrobial Resistance of Enteric Salmonella in Bangui, Central African Republic

Christian Diamant Mossoro-Kpinde,¹Alexandre Manirakiza,²Jean-Robert Mbecko,²Pembé Misatou,²Alain Le Faou,³and Thierry Frank²

Academic Editor: Gerd Pluschke

Received23 Sept 2015

Revised24 Nov 2015

Accepted08 Dec 2015

Published31 Dec 2015

Abstract

Introduction. The number of Salmonella isolated from clinical samples that are resistant to multiple antibiotics has increased worldwide. The aim of this study was to determine the prevalence of resistant Salmonella enterica isolated in Bangui. Methods. All enteric Salmonella strains isolated from patients in 2008 were identified and serotyped, and the phenotypes of resistance were determined by using the disk diffusion method. Nine resistance-associated genes, bla_TEM, bla_OXA, bla_SHV, tetA, aadA1, catA1, dhfrA1, sul I, and sul II, were sought by genic amplification in seven S.e. Typhimurium strains. Results. The 94 strains isolated consisted of 47 S.e. Typhimurium (50%), 21 S.e. Stanleyville (22%), 18 S.e. Enteritidis (19%), 4 S.e. Dublin (4%), 4 S.e. Hadar (4%), and 1 S.e. Papuana (1%). Twenty-five (28%) were multiresistant, including 20 of the Typhimurium serovar (80%). Two main phenotypes of resistance were found: four antibiotics (56%) and to five antibiotics (40%). One S.e. Typhimurium isolate produced an extended-spectrum β-lactamase (ESBL). Only seven strains of S.e. Typhimurium could be amplified genically. Only phenotypic resistance to tetracycline and aminosides was found. Conclusion. S. Typhimurium is the predominant serovar of enteric S. enterica and is the most widely resistant. The search for resistance genes showed heterogeneity of the circulating strains.

1. Introduction

Salmonellosis is a common disease. The strains of Salmonella enterica are not responsible for typhoid fever but mainly for enteric infections; however, the commonest serovar, Typhimurium, may cause systemic infections, especially in immunocompromised patients and children with malnutrition, severe anemia, and malaria [1, 2]. Strains of Salmonella resistant to multiple antibiotics are being isolated more and more frequently. Thus, the commonly used antibiotics have become inefficient [3] and have had to be replaced by more expensive drugs [4]. The latest surveys conducted in the Central African Republic (CAR) showed a high prevalence of resistance to ampicillin and cotrimoxazole [5], which is increasing with time. To confirm this evolution, we determined the antibiotic resistance of strains of S. enterica isolated in 2008. Furthermore, we examined multiresistant strains of S. Typhimurium by genic amplification for the presence of nine of the commonest genes associated with antibiotic resistance.

2. Methods

The study was performed in the unit of Clinical Bacteriology and Antibioresistance of the Institut Pasteur de Bangui between July and December 2008. Ninety-four strains of Salmonella were isolated, mainly from stools (56%) and blood (36%); two strains were from urine and one was from cerebrospinal fluid. Salmonella were identified on the basis of biochemical characteristics (API 20^E strips, bioMérieux, Craponne, France), and the serovar was determined according to the Kauffmann-White scheme. The Antimicrobial drug susceptibility was determined by using the disk diffusion method (Bio-Rad, Marnes-la-Coquette, France) on Mueller-Hinton Agar (MHA) and interpreted according to the recommendations of the Comité de l’Antibiogramme de la Société Française de Microbiologie (CA-SFM) (http://www.sfm-microbiologie.org/). All isolates were tested for their susceptibility to antimicrobial agents routinely used in clinical practice for Salmonella infections in CAR. The antibiotics included ampicillin (25 μg), amoxicillin (20 μg), clavulanic acid (10 μg), ticarcillin (75 μg), cefalotin (30 μg), cefotaxime (30 μg), streptomycin (10 UI), gentamicin (15 μg), nalidixic acid (30 μg), ciprofloxacin (5 μg), chloramphenicol (30 μg), sulfonamides (200 μg), and tetracycline (30 UI). If expanded-spectrum β-lactamase (ESBL) was found, additional antibiotics were tested (β-lactams and aminoglycosides). Strains were stored at −80°C in brain heart broth (Bio-Rad) with 20% glycerol.

Nine resistance-associated genes were sought by PCR with published techniques (Table 1) on six randomly selected strains and the ESBL-producing strain. After subculture on Mueller-Hinton Agar (Bio-Rad), DNA was extracted from the bacterial suspensions by thermolysis at 100°C in a water bath for 5 min, followed by rapid cooling at 20°C. After centrifugation (8855 ×g, 10 min), the supernatant was used for DNA amplification. PCR were run on a Gene Amp PCR System 9700 Thermocycler (Applied Biosystems, Saint-Aubin, France) as described previously [6, 7, 16]. Amplicon sizes were determined, from a molecular mass ladder (SmartLadder SF, EuroGentec, Angers, France) by gel electrophoresis in 2% ethidium bromide (Eurobio, Les Ulis, France) containing agarose (Invitrogen, Cergy-Pontoise, France) in Tris-acetate buffer at pH 8 and run at 100 V, 200 mA for 1 h. Results were read under UV. One negative (sterile distilled water) and three positive (S. Concord 07-670, S. Typhimurium 02-8213, and Shigella dysenteriae 1 CAR 10) controls were included.

3. Results

The 94 strains of Salmonella consisted of 47 S.e. Typhimurium (50%), 21 S.e. Stanleyville (22%), 18 S.e. Enteritidis (19%), 4 S.e. Dublin (4%), 3 S.e. Hadar (4%), and 1 S.e. Papuana (1%). Twenty-five strains (28%) were multiresistant: 20 S.e. Typhimurium (80%), 3 S.e. Enteritidis, 1 S.e. Papuana, and 1 S.e. Stanleyville. Among them, twenty-five isolates (28%) including S.e. Typhimurium (), S.e. Enteritidis (), S.e. Papuana (), and S.e. Stanleyville () were multiresistant to antibiotics. The studied patients were constituted by 14 women and 11 men. They were between 1 month and 40 years of age and presented an average age of 11 years. The isolates were isolated from stool (), blood (), cerebrospinal fluid (), and urine (). All strains isolated from blood were represented by S.e. Typhimurium. Most of the strains were resistant to amoxicillin, ticarcillin, streptomycin, sulfonamides, and cotrimoxazole and less frequently to cefalotin (4%), ciprofloxacin (2%), gentamycin (3%), and nalidixic acid (4%). All the strains except one ESBL-producing S. Typhimurium strain (S1027072) were susceptible to cefoxitin. The ESBL-producing strain was resistant to amikacin, tobramycin, netilmicin, kanamycin, fosfomycin, ceftazidime, cefepime, aztreonam, and nitroxoline; it remained susceptible only to imipenem. Otherwise, two common resistance profiles were observed: 14 (34%) (12 S. Typhimurium and 2 S. Enteritidis) were resistant to four drugs (ampicillin, chloramphenicol, streptomycin, and sulfonamides) and 10 (24%) (7 S. Typhimurium, 1 S. Enteritidis, one S. Hadar, and one S. Papuana) were resistant to five drugs (ampicillin, chloramphenicol, streptomycin, sulfonamides, and tetracycline) (Table 2).

All strains carried the catA1 resistance gene, six contained bla_TEM, dhfrA1, and Sul II, and five contained sul I. The genes bla_OXA, tetA, and aadA1 were found only once. The gene bla_SHV was not found, even in the ESBL-producing strain (Table 3).

4. Discussion

Three serovars of S.e. Typhimurium (), S.e. Stanleyville (21), and S.e Enteritidis () constituted 96% of the isolated strains. S.e. Typhimurium and S.e. Enteritidis were the enteric Salmonella isolated most frequently [8, 9]. The surprisingly high prevalence of S. Stanleyville in Bangui may represent a locally circulating strain. The blood isolates were obtained mainly from AIDS patients [10–13].

S.e. Typhimurium was the Salmonella serovar that was most resistant to antibiotics. It is confirmed today that its multidrug-resistant strains have emerged in sub-Saharan Africa [17]. In Malawi, epidemics of multidrug-resistant invasive nontyphoidal Salmonella (defined as resistant to ampicillin, chloramphenicol, and cotrimoxazole) have been recorded [17]. The continuous increase in its resistance [14] will limit the therapeutic possibilities more and more, as exemplified by the emergence of an ESBL-producing strain (S1027072).

Salmonella resistant to four and five drugs are found widely in Africa. Although the prevalence in Bangui is high (58%), up to 82% of Salmonella isolates have been reported to be resistant [14, 15, 18]. Additionally, the prevalence of resistance to chloramphenicol, amoxicillin, and cotrimoxazole was high (72%), as reported in Lomé (Togo) [15], but is even higher in Taiwan (95%) [19]. These three cheap antibiotics used to be the first-line treatment for salmonellosis but can no longer be used. Third-generation cephalosporins and fluoroquinolones remain active against most strains of Salmonella in Bangui; in Asia, however, up to 54% of strains are resistant to these two antibiotics [20, 21]. Ciprofloxacin (or norfloxacin) is used as first-line treatment, except in children, for whom ceftriaxone is preferred [22]. Systematic use and self-medication with these antibiotics, which can be bought freely, raise concern that there might be a rapid increase in resistance [14, 21].

The use of tetracyclines and penicillin as growth promoters in animal husbandry is a factor in the increasing prevalence of resistance [23–25], but no information on this aspect is available in CAR.

The genes for which we searched only partly explain phenotypic resistance. There are many resistance genes, and one type of in vitro resistance may have several mechanisms. For example, aminoside resistance may be associated with three genes: aphA (aminoglycoside phosphotransferase), aacC (aminoglycoside acetyltransferases), and aadA and aadB (two variants of aminoglycoside adenyltransferases) [24], all of which are plasmid-encoded [25]. Antibiotic resistance may also be linked to other mechanisms, such as chromosomal mutations (modification of the ribosome structure, modification of the permeability of the cell wall, and presence of an efflux pump), which cannot be identified by genic amplification. Nevertheless, the presence of five genotypes among the six circulating S.e. Typhimurium strains resistant to four and five drugs indicates wide heterogeneity.

The ESBL strain with its seven resistance-associated genes differs from the other six; it is either imported or acquired a plasmid locally. The gene CTX-M-15 has been described as the commonest in CAR and has been found in E. coli and Klebsiella pneumoniae strains [6]. As it was not present in the multiresistant S.e. Typhimurium strain, its origin remains unknown. It would be difficult to determine which EBSL is present, as no other isolate harboured this enzyme, and 230 ESBLs have been described so far [26]. The isolation of a multiresistant ESBL-producing strain in Bangui is worrying, as its spread would complicate patient care in view of the limited access in the country to the antibiotics to which such strains are susceptible [4, 20, 26]. A systematic study of isolated S.e. Typhimurium strains will be required to determine whether this strain is present in the country. For the moment, this appears unlikely, as no other isolate has been obtained.

The main limitation of our study is that data of the patient characteristics (age, sex, HIV status, malaria status, and malnutrition status) were not collected. Indeed, it would be essential to assess the impact of these characteristics with outcomes.

5. Conclusion

This preliminary study demonstrates a high prevalence of antibiotic-resistant S. Typhimurium and diverse associated genes in Bangui. Further studies will elucidate the epidemiology of the antibiotic resistance and make it possible to characterize the genes involved and the plasmids that carry them. In the absence of rational use of antibiotics in the country, continuous dissemination of resistant strains is likely. Systematic antibiograms should be performed for all isolated strains to follow the evolution of resistance and thus ensure effective treatment of infections, which are of particular concern for immunocompromised patients.

Conflict of Interests

The authors declare that they have no conflict of interests regarding the publication of this paper.

Authors’ Contribution

Christian Diamant Mossoro-Kpinde, Alain Le Faou, and Thierry Frank were involved in study design, data acquisition, analysis and interpretation of results, and drafting the paper. Jean-Robert Mbecko and Pembe Misato performed laboratory analyses. Alexandre Manirakiza participated in data analysis, interpreting the results, and writing the paper. All the authors approved the final version.

Acknowledgment

This study was funded by the Institut Pasteur in Paris (ACIP grant).

References

C. K. Okoro, R. A. Kingsley, T. R. Connor et al., “Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa,” Nature Genetics, vol. 44, no. 11, pp. 1215–1221, 2012.
View at: Publisher Site | Google Scholar
S. Kariuki and R. S. Onsare, “Epidemiology and genomics of invasive nontyphoidal Salmonella infections in Kenya,” Clinical Infectious Diseases, vol. 61, supplement 4, pp. S317–S324, 2015.
View at: Publisher Site | Google Scholar
R. S. Hendriksen, M. Mikoleit, C. Kornschober et al., “Emergence of multidrug-resistant salmonella concord infections in Europe and the United States in children adopted from Ethiopia, 2003–2007,” Pediatric Infectious Disease Journal, vol. 28, no. 9, pp. 814–818, 2009.
View at: Publisher Site | Google Scholar
K. Mølbak, “Human health consequences of antimicrobial drug-resistant Salmonella and other foodborne pathogens,” Clinical Infectious Diseases, vol. 41, no. 11, pp. 1613–1620, 2005.
View at: Publisher Site | Google Scholar
T. Frank, V. Gautier, A. Talarmin, R. Bercion, and G. Arlet, “Characterization of sulphonamide resistance genes and class 1 integron gene cassettes in Enterobacteriaceae, Central African Republic (CAR),” Journal of Antimicrobial Chemotherapy, vol. 59, no. 4, pp. 742–745, 2007.
View at: Publisher Site | Google Scholar
T. Frank, G. Arlet, V. Gautier, A. Talarmin, and R. Bercion, “Extended-spectrum β-lactamase-producing Enterobacteriaceae, Central African Republic,” Emerging Infectious Diseases, vol. 12, no. 5, pp. 863–865, 2006.
View at: Publisher Site | Google Scholar
M. Lavollay, K. Mamlouk, T. Frank et al., “Clonal dissemination of a CTX-M-15 β-lactamase-producing Escherichia coli strain in the Paris Area, Tunis, and Bangui,” Antimicrobial Agents and Chemotherapy, vol. 50, no. 7, pp. 2433–2438, 2006.
View at: Publisher Site | Google Scholar
A. G. Sow, A. A. Wane, M. H. Diallo, C. S.-B. Boye, and A. Aïdara-Kane, “Genotypic characterization of antibiotic-resistant Salmonella enteritidis isolates in Dakar, Senegal,” Journal of Infection in Developing Countries, vol. 1, no. 3, pp. 284–288, 2007.
View at: Google Scholar
F. X. Weill and S. Le Hello, Rapport Annuel du Centre National de Référence des Salmonella, Centre National de Référence des Salmonella, Paris, France, 2008.
G. A. Ki-Zerbo, A. B. Sawadogo, N. Kyelem, A. Zoubga, R. Thiombiano, and G. Durand, “Bactériémies à entérobactéries et infection au virus de l'immunodéficience humaine: étude de 26 cas au centre hospitalier national de Bobo-Dioulasso (Burkina Faso),” Medecine et Maladies Infectieuses, vol. 30, no. 12, pp. 753–756, 2000.
View at: Publisher Site | Google Scholar
E. Bernard, M. Carles, C. Pradier, N. Ozouf, and P. Dellamonica, “Septicémies communautaires et nosocomiales chez le patient infecté par le virus de l'immunodéficience humaine,” La Presse Médicale, vol. 25, pp. 746–750, 1996.
View at: Google Scholar
F. J. Angulo and D. L. Swerdlow, “Bacterial enteric infections in persons infected with human immunodeficiency virus,” Clinical Infectious Diseases, vol. 21, no. 1, pp. S84–S93, 1995.
View at: Publisher Site | Google Scholar
W. C. Levine, J. W. Buehler, N. H. Bean, and R. V. Tauxe, “Epidemiology of nontyphoidal Salmonella bacteremia during the human immunodeficiency virus epidemic,” Journal of Infectious Diseases, vol. 164, no. 1, pp. 81–87, 1991.
View at: Publisher Site | Google Scholar
M. Mastouri, R. E. F. Amel, B. A. Hajer et al., “Surveillance de la résistance aux antibiotiques des salmonelles non typhoïdiques dans la région de Monastir,” Microbiologie Hygiène Alimentaire, vol. 16, pp. 24–27, 2004.
View at: Google Scholar
A. Y. Dagnra, K. Akolly, A. Gbadoe, K. Aho, and M. David, “Émergence des souches de salmonelles multirésistantes aux antibiotiques à Lomé (Togo),” Médecine et Maladies Infectieuses, vol. 37, no. 5, pp. 266–269, 2007.
View at: Publisher Site | Google Scholar
M. B. Kerrn, T. Klemmensen, N. Frimodt-Möller, and F. Espersen, “Susceptibility of Danish Escherichia coli strains isolated from urinary tract infections and bacteraemia, and distribution of sul genes conferring sulphonamide resistance,” Journal of Antimicrobial Chemotherapy, vol. 50, no. 4, pp. 513–516, 2002.
View at: Publisher Site | Google Scholar
N. A. Feasey, G. Dougan, R. A. Kingsley, R. S. Heyderman, and M. A. Gordon, “Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa,” The Lancet, vol. 379, no. 9835, pp. 2489–2499, 2012.
View at: Publisher Site | Google Scholar
M. Karczmarczyk, M. Martins, M. McCusker et al., “Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars,” FEMS Microbiology Letters, vol. 313, no. 1, pp. 10–19, 2010.
View at: Publisher Site | Google Scholar
K.-Y. Huang, Y.-W. Hong, M.-H. Wang et al., “Molecular epidemiology and antimicrobial susceptibility of Salmonella enterica serotype Stanley isolates in Taiwan,” Journal of Microbiology, Immunology and Infection, vol. 40, no. 5, pp. 411–418, 2007.
View at: Google Scholar
F. Yu, Q. Chen, X. Yu et al., “High prevalence of extended-spectrum beta lactamases among Salmonella enterica Typhimurium isolates from pediatric patients with diarrhea in China,” PLoS ONE, vol. 6, no. 3, Article ID e16801, 2011.
View at: Publisher Site | Google Scholar
S. Xia, R. S. Hendriksen, Z. Xie et al., “Molecular characterization and antimicrobial susceptibility of Salmonella isolates from infections in humans in Henan Province, China,” Journal of Clinical Microbiology, vol. 47, no. 2, pp. 401–409, 2009.
View at: Publisher Site | Google Scholar
S. L. Foley and A. M. Lynne, “Food animal-associated Salmonella challenges: pathogenicity and antimicrobial resistance,” Journal of Animal Science, vol. 86, no. 14, supplement, pp. E173–E187, 2008.
View at: Google Scholar
P. Sanders, A. Bousquet-Melou, C. Chauvin, and P. L. Toutain, “Utilisation des antibiotiques en élevage et enjeux de santé publique,” INRA Productions Animales, vol. 24, pp. 199–204, 2011.
View at: Google Scholar
J.-L. Martel and E. Chaslus-Dancla, “Utilisation des antibiotiques chez les animaux d'élevage,” Revue du Praticien, vol. 51, no. 1, pp. 9–12, 2001.
View at: Google Scholar
D. E. Corpet, “Mechanism of antimicrobial growth promoters used in animal feed,” Revue de Médecine Vétérinaire, vol. 151, no. 2, pp. 99–104, 2000.
View at: Google Scholar
D. L. Paterson and R. A. Bonomo, “Extended-spectrum β-lactamases: a clinical update,” Clinical Microbiology Reviews, vol. 18, no. 4, pp. 657–686, 2005.
View at: Publisher Site | Google Scholar

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Copyright © 2015 Christian Diamant Mossoro-Kpinde et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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