Journal of Tropical Medicine / 2015 / Article / Tab 3 / Research Article
Genome-Wide Prediction of Vaccine Candidates for Leishmania major : An Integrated Approach Table 3 (a) NetCTL predicted top scoring CTL epitopes along with start position and processing score for the HLA-B supertypes (B7, B8, B27, and B39) in 25 L. major candidate antigens. (b) NetCTL predicted top scoring CTL epitopes along with start position and processing score for the HLA-B supertypes (B44, B58, and B62) in 25 L. major candidate antigens.
(a) Antigens B7 B8 B27 B39 1 APALYTISL (508: 1.7598) PLRWRFRAV (957: 2.1122) RRAKRGIQK (908: 1.8727) YQLTGTPVL (439: 2.2884) 2 TPSSARLSM (83: 1.7256) FPISKGAAL (203: 2.2300) VRVDTQSSF (195: 1.4558) SFDDYTMVL (42: 2.2280) 3 APNYYLTPL (312: 1.7308) YSLWVAAAV (486: 1.0021) SRAILIAVL (3: 1.3691) SRAILIAVL (3: 1.8971) 4 APNYYLTPL (517: 1.7308) FVRVWDRSL (215: 1.8335) LRVSHSSVK (224: 1.3540) VRAPFTIQL (155: 1.5796) 5 APAHGSVSL (33: 1.7709) VKHLLMAAM (3: 1.4045) DRLGQCMVV (109: 0.5955) KHLLMAAML (4: 1.0764) 6 SPTPLLAAL (256: 1.6602) NPHKRGAAA (9: 1.8533) KRGAAAVLL (12: 1.3311) HKRGAAAVL (11: 1.2133) 7 APSPCVPPL (175: 1.5944) AAYRSYAAV (144: 0.9391) MQVLLGADF (237: 0.8288) SHDGKHVIL (31: 2.6870) 8 LPRLFLAFL (5: 1.6144) LLPRLFLAF (4: 1.5126) GRIKRNWQK (37: 1.4947) IHPERTVAL (294: 2.2073) 9 SARARTLSL (9: 1.8057) YPRIKLLVI (69: 2.0337) ARARTLSLY (10: 1.2183) YEAAQGVLL (170: 1.5760) 10 QPTTFKNPI (80: 1.1417) RMHLIGTAV (33: 1.4672) KQWTRRMHL (28: 1.5430) HKEFYIYYL (15: 1.4474) 11 TPRTTTEPL (274: 1.7685) MSKARSLQL (181: 1.3726) RRLVLAATL (6: 1.9702) QRTNTLAVL (42: 1.4593) 12 MPYLRGVSL (300: 1.8440) MPYLRGVSL (300: 2.1953) RRLVLAATL (6: 1.9702) YRHVMIREL (104: 1.7846) 13 MPRLRLVGL (493: 1.7353) MPRLRLVGL (493: 2.2824) RRLVLAATL (6: 1.9702) TAAQRTHTL (39: 1.5626) 14 MPAPPLNPF (414: 1.6955) KEKERHKAV (94: 1.8613) RRLMPAPPL (411: 1.7237) YESNTVSAL (317: 2.1937) 15 TPRIPLDSL (187: 1.5747) SSHRKHKAM (162: 1.6542) RRMRAGSSH (250: 1.6225) AHAPQNAAL (138: 2.5007) 16 MPRKRGRPL (237: 1.8778) MPRKRGRPL (237: 2.3735) RRTLQAQQL (546: 1.5424) DHAQGVAAL (877: 2.1234) 17 VPHHPGGDV (134: 0.9985) YVEEFYQAA (86: 0.7269) KRVMAPSDR (37: 1.1717) FHDPSTVRL (159: 2.8191) 18 HPSGAAVAI (409: 1.4883) RLYVEDMVL (284: 1.2511) RRAEKEKAK (215: 1.7438) NHSAHTEVL (147: 2.1507) 19 KPSAVMTAF (919: 1.8285) EPSRRTVQF (667: 1.7157) RRWAAQNTF (77: 2.1177) FRVDGADAL (675: 2.1322) 20 AARQRIMTM (156: 1.6084) ILMWSFAAL (204: 1.7177) RRAPTGLYE (71: 0.9324) QLDDNWWIL (197: 1.3196) 21 APAAPHSPL (153: 1.7675) ELRRRGQEV (1113: 1.9415) RRLLAASPF (877: 2.0769) NQATTSLAL (504: 1.9553) 22 YPAHRSKIV (163: 1.5878) DAQVRQTAL (281: 1.8406) QRRDVVIGM (75: 1.3697) SHLVSVDKL (331: 1.5360) 23 TPRVGCSVA (63: 1.2802) FFRRYTRVF (46: 2.1834) RRYTRVFPA (48: 1.7379) YFTLPTAVL (16: 1.6593) 24 SPLSVSAVF (27: 1.5060) YMQYRLTPF (111: 2.0206) FRYDHINSY (61: 1.7109) YASQKFVQL (311: 1.2960) 25 RPRLFARAI (256: 1.7812) RLPRRLQAM (301: 2.1397) RRLLVHAGI (483: 1.8779) HSEAATSSL (72: 1.7315)
(b) Antigens B44 B58 B62 1 RELQSVYLL (1293: 1.9593) GTFAAPLRW (952: 2.0156) SQQETSSLY (802: 1.4851) 2 VESGALFSF (276: 1.5005) VSGGSTVSF (299: 1.2478) LVVDASSLF (232: 1.2364) 3 AECDTGYSL (383: 1.7888) SAAAPYSLW (481: 1.7104) VINSAAAPY (478: 1.2841) 4 AECDTGYSL (588: 1.7888) SAAAPYSLW (686: 1.7104) AMKDPYTNY (355: 1.5075) 5 PEQSKNAAL (153: 0.9583) AMASDASSW (20: 1.2946) SGYMPTASF (141: 1.1587) 6 CESGYALTV (233: 1.5835) VAATVACVM (269: 1.3253) SGYALTVSY (235: 1.2956) 7 HEANVFGDL (217: 1.4597) ITLASHPHY (207: 1.8535) MQVLLGADF (237: 1.4107) 8 EEHKFHEQL (234: 1.7745) STQPPVSSW (375: 1.3179) QFIQGRCPY (279: 1.2654) 9 YEAAQGVLL (170: 1.8058) QSFAALQSW (186: 1.9574) REHGCAAYY (301: 1.0743) 10 KEFYIYYLA (16: 1.2817) TAVGVAICW (62: 1.8196) RMHLIGTAV (33: 1.0529) 11 PEWGSMTSL (152: 1.5995) ISGSVPPEW (146: 1.9830) YVSGISPTY (83: 1.4703) 12 LEGLTSLTL (131: 1.7189) ITGPLPPQW (241: 1.9075) YVRVISTTY (83: 1.4798) 13 SEMKSLTSL (323: 1.9322) GSLPSEWSW (171: 1.9009) TQVSGTLPL (336: 1.2966) 14 GEFSDIRQL (25: 1.9010) AAVADAEVW (458: 1.6950) QVKELKVSY (182: 1.3565) 15 AQTRVHPGL (115: 0.9806) MSLFVSTLF (381: 1.5159) FVSTLFGAF (384: 1.2037) 16 GEARNPHRL (724: 1.7322) AASAPSFQW (501: 1.9979) RLAAEAQGF (516: 1.3449) 17 EFYQAAGHL (89: 0.5235) KADTYVEEF (82: 1.5709) QDMATVFAY (150: 1.1423) 18 GEDEEQVSL (71: 1.8499) SAAKAQVSY (196: 1.3995) IVSGLVESY (299: 1.3837) 19 AEHRRGTQL (978: 1.4654) CASTATHVF (601: 1.7234) MMSQSLSTY (1: 1.4755) 20 AEMQRNIDR (60: 0.5443) LMWSFAALF (205: 1.0739) RGYTRGIPY (33: 1.3338) 21 TESVQFLKL (968: 1.5363) LTSAINQFW (140: 1.8100) SMMLPAGDF (797: 1.4153) 22 FEAPLGEML (132: 1.6939) VAFACYFLF (26: 1.6804) VLFTDGTPY (57: 1.4757) 23 QEAKARTTV (193: 1.3216) TGSSPSVYF (9: 1.0291) AMHDDQLRF (38: 1.2996) 24 KEPGHKIPL (256: 1.9127) LTAPVYMQY (106: 1.7822) SQSLTAPVY (103: 1.4574) 25 REWYSADVL (525: 1.8122) KSSALAHKL (246: 1.5564) RVVKQSLCF (128: 1.1964)